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All software contributed to this library is made available free to the microscopy community. Any shareware fees requested by authors are the responsibility of the end-user. Software in this library may not be sold or included in for-profit program collections unless separate permissions have been obtained from individual authors. The various software programs listed herein remain property of the documented authors and users are encouraged to reference the authors as appropriate. Contributions are invited from all members of the microscopy community, fully documented programs, subroutines or other computer-related microanalysis information (i.e. hardware hints, interconnection instructions etc.) which maybe useful to the general microscopy community are welcome. Each submission should be accompanied by at least a simple abstract file, an example of which is included in this document, which should describe what the software does and on which computer(s) the software is designed to run. If the software takes occupies a large amount of disk space, it is advisable to compress the files before submitting them. This will help us to conserve disk space. Submitting compresses files makes the inclusion of a short description file imperative. Evaluations of the software and comments may be appended to by the system librarian time permitting. There are several ways of submitting software to this library. Since the library represents the merger of the Microscopy Society of America sponsored Electron Microscopy and Public Domain Library, managed by Nestor Zaluzec of Argonne National Laboratory, and the Microbeam Analysis Society sponsored Microbeam Analysis Society Software Library, managed by John Mansfield of The University of Michigan, the contents of the Microscopy & Microanalysis Software Library (MMSLib) are jointly managed by those two individuals. The libraries are stored in two locations: a Unix fileserver at Argonne National Laboratory and a Unix fileserver at The University of Michigan College of Engineering. Software submissions may by made to either Nestor or John. Their addresses follow. Nestor J. Zaluzec Advanced Analytical Electron Microscope Argonne National Laboratory Materials Science and Technology Division Bldg. 212 9700 S. Cass Avenue Argonne, Illinois, USA 60439 Telephone: (312) 972-5075 Email Address: Zaluzec@aaem.amc.anl.gov John Mansfield North Campus Electron Microbeam Analysis Laboratory 413 SRB University of Michigan 2455 Hayward Ann Arbor MI 48109-2143 Phone: (313)936-3352 FAX (313)936-3352 Email Address: jfmjfm@engin.umich.edu URL: http://www.engin.umich.edu/~jfmjfm/jfmjfm.html Submission Options: 1. Disks and Tapes in any ot the follwoing formats may be sent directly to Nestor or John Computers: DEC PRO-380, PDP-11, VAX-11/730-785 Floppy Disks: RX01,RX02 Files-11 Format (8 inch) RX50, P/OS,Files-11 Format (5 1/4 inch) Diskpacks: RL01,RL02 Files-11 Format Magnetic Tape: 800/1600 BPI, 9 Track, ANSI Standard Format Computers: IBM PC and Compatibles Floppy Disks: 5.25" or 3.5" formats, any density. Syquest Disks: 45 Megabyte only Zip Drive: 100 Megebyte. Computers: APPLE IIC, II+, IIE, MacIntosh Floppy Disks: 5.25" or 3.5" formats, any density. Syquest Disks: 45 Megabyte only Zip Drive: 100 Megebyte. Computers: Unix Workstations Floppy Disks: 3.5" formats Unix Tar Files DAT: Unix Tar Files Exabyte: Unix Tar Files. Remember to clearly state on which computer the disk or tape was written. It saves us a lot of time in uploading to the fileservers. Upon request, media will be returned to the authors after copying and verification is completed. 2. You may mail the software as an enclosure from your favorite email program provided the entire package is less than 2 Megabytes. Larger packages than this tend to overload some people's mail gateways. Individual files within the package should be less than 1.4 Megabytes, this enables us to distribute copies of the software on 3.5" floppy disk. The enclosure should be either in binhex format or uuencode format. 3. Files may also be submitted by anonymous ftp. You may place the files in the /pub/incoming directory of the freebie.engin.umich.edu fileserver. You should immediately also send and email message to John Mansfield informing him that you have placed a file in that location. If files uploaded to that directory are not identified within 12 hours, then they are deleted by the network system managers. Format of Submissions 1. Each contribution to the MMSLib must include at least one file that contains an abstract outlining the basic functions and requirements of the program. This file should be simply named "program.abs" where program is the name of the software and is a name less than or equal to 8 characters long. The reason for this is that the software libraries will be viewed by users of Macs, Unix workstations and PCs and although the newer versions of the PC operating systems may allow the use of longer names, eight letters is currently the maximum. 2. All software must be documented. Documentation can either be in a separate text file or a word processor file that can be read with typical word processing applications available for the computer on which the software runs. The documentation file should be called "program.doc". 3. If the submission contains only source code and the entire package is less than 1.4 megabytes (with the document and abstract file), then the software may be submitted as a text file. The name of the text file should be "program.src". There will then be three files in the submission: "program.abs" "program.doc" "program.src" Each of the abs, doc and src files ahould have an information header in the following format.: Title: Example of Abstract File Keywords: XEDS, EELS, CBED, CTEM, HVEM, HREM Computer: Pentium PC, Power Macintosh, Silicon Graphics Indigo Operating System: Windows 95, MacOS 7.5.1, HP-UX Programming Language: C++, Pascal, Fortran 90, Common Lisp Hardware Requirements: 24-bit graphics card, CD-ROM, 256Meg of memory. .Author(s): Andrew Hacker Correspondence Address A Small Midwestern University, Smallville, Nostate Abstract: ~200 word abstract. Documentation: Full documentation Source: Full Source. 4. If there are many files in the submission or the submission is large, the author is encouraged to compress the files before submission. The following compression formats are encouraged, others may be supported, please ask either Nestor or John if you have another format that you would like to use. We have chosen the following formats because they are ÒstandardsÓ for the computers listed and there are shareware or freeware decoders available or the decoding software is part of the operating system.. ComputerFormat File ExtensionUnixCompress.ZMS-DOSPKZip.ZIPMacintoshStuffit.SIT 5. If your compression software supports the creation of self-extracting archives, you are encouraged to make your archives self-extracting. Be sure that you do not name the archive the same name as one of the files that it contains or it will give error messages when a user tries to decompress it. Example submission packages If you have a small subroutine that can be compiled for use on any computer, then it is probably best to submit it as a set of three text files. An example is the ATOM subroutine for calculating atom scattering factors by David Bird at the University of Bath. In the directory MMSLib/DIFF/ATOM there are the following files: Atom.Abs 16K Atom.Doc 16K Atom.Src 48K Atom.Total 96K The file Atom.Total contains the entire package. Since this file will easily fit on any common floppy disk format, it is not necessary to compress the submission. An entirely different scenario exists for PRSUPR, an X-ray spectrum analysis program by John Donovan of the University of California at Berkeley. That program is so large that it comprises of 4 .ZIP files (see /MMSLib/EMPA/PRSUPR684): prsupr1.zip 736K prsupr2.zip 1,264K prsupr3.zip 1,104K prsupr4.zip 928K Note each file can fit on a high density 3.5Ó floppy disk. All the documentation sources and examples are included. Note to Authors When submitting files, please remember that most other people are completely unfamiliar with you program and how it works. Make it as easy as you can for someone to take it away and use it. Too much documentation can be worse than too little! 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